PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00540g00026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 689aa    MW: 75109.3 Da    PI: 6.3515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00540g00026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.5e-09260280526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C++f++ GtC++Gd C +aHg
  Peaxi162Scf00540g00026.1 260 PCPDFRK-GTCQRGDACEYAHG 280
                               8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-1716156IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-1824166IPR020683Ankyrin repeat-containing domain
PfamPF127968.8E-953129IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.75960167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00396090IPR002110Ankyrin repeat
CDDcd002043.89E-1462156No hitNo description
PROSITE profilePS5008810.63395130IPR002110Ankyrin repeat
SMARTSM002480.01395127IPR002110Ankyrin repeat
SMARTSM003561.6E-5255281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4259282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873260282IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6260280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4288318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MEAEIQKQKD HVPDFSQLLE LSASDDITNF KKAVEEEGHD INEVGLWYGR RIGVKKMGYE  60
ERTPLMIAAT FGSKQVLNYM LEKGCADVNQ ACGSDKATAL HCAITGDSAA LLEVVKLLLD  120
TSADVNLVDS NGKRPADLIL SRSCLGSRRK MLEYMLGGGS NPEEGSELIE QIISEQAEEK  180
LLLTPTVCKY GSEKKEYPAD PSLPDIKNGI YGTDDFRMYI FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PRKYHYSCVP CPDFRKGTCQ RGDACEYAHG IFECWLHPAQ YRTRMCKDET  300
SCTRRVCFFA HKPEELRPLY PSTGSAVPSP RSYSTGASAL DITAITPLAL GSPSVMMPPT  360
STPPMSPSAG APSVGGSLWP CQSTLATPTL QLPVSRLKAA ISARDVELDN SLLGFESHHL  420
RQDQLMDDLS ALSSPSGWNN SSARAAAFAA SSSDRNSELG RHGGIKPTNL DDFFSTLDSK  480
ILSQLQGLTL DGVSPQLQSP KGMQMRQNMN QQLMTSYSSG HSSPSFRTSS SSFGIDPSCA  540
ATAALSSRSA AFAKRSQSFI DRSTVSHFSG ISSSISAASP TPSNLSSWGS PDGKLDWGIQ  600
KEELNKLRKS ASFGLRSSGS RLPMSEPSNL DSSIEPDVSW VQSLVKDSPA VSSGKFAMEN  660
QQYHLNTSRG SETIPTWVDL YMEQEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795434.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLM1CZB20.0M1CZB2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-157C3H family protein